White jute Corchorus capsularis Var. CVL-1 RNA-Seq Waterlogging Strss... - SRA

SRX8842373: White jute Corchorus capsularis Var. CVL-1 RNA-Seq Waterlogging Strss 4hr replication-1
1 ILLUMINA (NextSeq 500) run: 19.6M spots, 5.4G bases, 2.3Gb downloads

Design: RNA-seq libraries were prepared from isolated total RNA using TruSeq Stranded mRNA Sample Prep Kit (Illumina) according to the manufacturers instructions where first strand cDNA was synthesized using SuperScript II Reverse Transcriptase (Thermo Fisher) and oligo(dT) primer.

Submitted by: Bangladesh Jute Research Institute

Study: Corchorus capsularis cultivar:CVL-1 Genome sequencing and assembly

PRJNA215142 • SRP053213 • All experiments • All runs

show Abstracthide Abstract

Jute (Corchorus sp.) is one of the most important natural fiber crop and second largest source of foreign exchange earner in Bangladesh. Corchorus capsularis L. and Corchorus olitorius L are economically important species from the genus Corchorus are cultivated. A single jute plant, “variety CVL-1” for C. capsularis was used for genome and transcriptome sequencing.

Sample: White jute Corchorus capsularis Var. CVL-1 RNA-Seq waterlogging-stress

SAMN15617220 • SRS7105454 • All experiments • All runs

Organism: Corchorus capsularis

Library:

Name: BARJ_CVL1_RNASeq_Water_Log_Stress_4hr_Rep1

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: Oligo-dT

Layout: PAIRED

Runs: 1 run, 19.6M spots, 5.4G bases, 2.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR12342668	19,636,674	5.4G	2.3Gb	2021-08-23

ID:: 11498962

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity